Methods

This page summarizes the methods available from the Comai lab.

Bioinformatic tools

• Tools for Mpileup generation and parsing

• MAPS: a Mutation Detection and Genotyping tool

• Bin-by-sam: normalized dosage analysis using Illumina short reads. 

Funding

This page and the connected tools are funded by:

• NSF Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids)

• NSF Plant Genome grant DBI-0924025. Heterosis Challenge Grant (HCG):The Regulatory Disruption Hypothesis for Heterosis

• NSF Plant Genome grant DBI-0822383 (“TILLING by Sequencing”)

• National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.